Common Lisp Package: SAM-TEST

SAM/BAM alignment format tests.

README:

FUNCTION

Private

Undocumented

CANONICAL-HEADER (HEADER)

GENERATE-BAM (FILESPEC NUM-REFS REF-LEN &REST ARGS)

HEADER-EQUAL (HEADER1 HEADER2)

MAKE-ALN-GENERATORS (NUM-REFS READ-GROUP &REST ARGS)

TEST-BINARY-FILES-EQL (FILESPEC1 FILESPEC2)

TEST-SAM-EQUAL (FILESPEC1 FILESPEC2)

MACRO

Private

Undocumented

WITH-TMP-BAM-FILE ((FILE) &BODY BODY)

CLASS

Public

Undocumented

CL-SAM-TESTS

Private

Undocumented

BAM-INDEXING-TESTS